12. Qi LS*, Arkin AP*. A versatile framework for microbial engineering using synthetic noncoding RNAs. (2014) Nat. Rev. Microbiol. 12, 341-354. (* Co-corresponding author)

11. Chen B, Gilbert LA, Cimini BA, Schnitzbauer J, Zhang W, Li GW, Park J, Blackburn EH, Weissman JS, Qi LS*, Huang B*. (2013) Dynamic imaging of genomic loci in living human cells by an optimized CRISPR/Cas system. Cell 155, 1479-1491.  (* Co-corresponding author)

10. Larson MH, Gilbert LA, Wang X, Lim WA, Weissman JS, Qi LS. (2013) CRISPR interference (CRISPRi) for sequence-specific control of gene expression. Nat. Protoc. 8, 2018-2196.

9. Gilbert LA,Larson MH, Morsut L, Liu Z, Brar GA, Torres SE, Stern-Ginossar N, Brandman O, Whitehead EH, Doudna JA, Lim WA,Weissman JS, Qi LS. (2013) CRISPR-mediated modular RNA-guided regulation of transcription in eukaryotes. Cell 154, 442-451.

8. Qi LS*, Larson MH, Gilbert LA, Doudna JA, Weissman JS, Arkin AP, Lim WA. (2013) Repurposing CRISPR as an RNA-guided platform for sequence-specific control of gene expression. Cell 152, 1173-1183. (* Corresponding author)

7. Qi LS,Haurwitz RE, Shao WJ, Doudna JA, Arkin AP. (2012) RNA processing enables predictable programming of gene expression. Nat. Biotechnol. 30, 1002-1006.

6. Liu CC*, Qi LS*, Lucks JB,Segall-Shapiro TH, Wang D, Mutalik VM,Arkin AP. (2012) An adaptor from translational to transcriptional control enables predictable assembly of complex regulation. Nat. Methods 9, 1088-1094 (* Equal Contribution)

5. Qi LS, Lucks JB, Liu CC, Mutalik VK, Arkin AP. (2012) Engineering naturally occurring trans-acting non-coding RNAs to sense molecular signals. Nucleic Acids Res. 40, 5775-5786.

4. Mutalik VK*, Qi LS*, Guimaraes JC, Lucks JB, Arkin AP (2012). Rationally designed families of orthogonal RNA regulators of translation. Nat. Chem. Biol. 8, 447-454. (* Equal contribution)

3. Lucks JB*, Qi LS*, Mutalik VK, Wang D, Arkin AP. (2011) Versatile RNA-sensing transcriptional regulators for engineering genetic networks. Proc. Natl Acad. Sci. USA 108, 8617-8822. (* Equal contribution)

2. Liu CC, Qi LS, Yanofsky C, Arkin AP. (2011) Regulation of transcription by unnatural amino acids. Nat. Biotechnol. 29, 164-168.

1. Lucks JB, Qi LS, Whitaker WR, Arkin AP. (2008) Toward scalable parts families for predictable design of biological circuits. Curr. Opin. Microbiol. 11, 567-573. (Review)